PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0078s0410.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 243aa MW: 27030.7 Da PI: 7.0745

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0078s0410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.4	1.1e-28	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C +C+vlr++C+++C+++p++ ++q++++ +++k++G++ +++l++a p+ r+++++sl+yeA+ r+ +PvyG+vg++++ SapurV1A.0078s0410.1.p 4 SCHGCRVLRKGCNDNCTIRPCLqwiksTDSQANATLFLAKFYGRAGLINLIEAGPQRLRPAIFRSLLYEACGRIVNPVYGSVGMLWS 90 6*******************9998777889*************************************************** PP DUF260 83 lqqqleqlkaelall 97 +++ +q++++++l SapurV1A.0078s0410.1.p 91 GNWAECQAAVDAVLK 105 ******9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.793	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-23	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRMSCHGCRV LRKGCNDNCT IRPCLQWIKS TDSQANATLF LAKFYGRAGL INLIEAGPQR 60 LRPAIFRSLL YEACGRIVNP VYGSVGMLWS GNWAECQAAV DAVLKGLPIV STPSSSDVPA 120 PHLISSLNTH DIRHVSRHQN SPELRKVKSR TRFKRSMPNS LAEPTVRLNP EELGFEPVRE 180 PWPGHLGNGD SYIKDEDSIL ATDETVEDSL WSRVEPEQVF KFNRQSDDSD LSLELTLALV 240 SE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0078s0410.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314861.3	1e-149	LOB domain-containing protein 41
Refseq	XP_011007889.1	1e-150	PREDICTED: LOB domain-containing protein 42
Swissprot	Q9CA30	7e-75	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	B9HWH6	1e-150	B9HWH6_POPTR; Uncharacterized protein
STRING	POPTR_0010s13480.1	1e-150	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	6e-77	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	SapurV1A.0078s0410.1.p