PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0079s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 246aa    MW: 27153.9 Da    PI: 8.1517
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0079s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.5e-304107199
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C+++C l+p++     p++q++++ +++k++G++ +++l++a +++ r+++++sl+yeA+ r+ +PvyG+vg++++
  SapurV1A.0079s0150.1.p   4 SCNGCRVLRKGCSDSCNLRPCLqwiktPDSQANATLFLAKFYGRAGLINLIEAGHPKLRQAIFRSLLYEACGRIVNPVYGSVGMLWS 90 
                             6************************************************************************************** PP

                  DUF260  83 lqqqleqlkaelallke 99 
                             +++  +q++++++l ++
  SapurV1A.0079s0150.1.p  91 GNWAQCQAAVDAVLKGS 107
                             *********99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3133109IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSDSCN LRPCLQWIKT PDSQANATLF LAKFYGRAGL INLIEAGHPK  60
LRQAIFRSLL YEACGRIVNP VYGSVGMLWS GNWAQCQAAV DAVLKGSPIM SLPSTSEVPA  120
PHLISSLNTY DIRHVSRDQE CSPGLTKVKN QTRFKRSVTT RPNSQTEPTR QDKPVEWVFE  180
PARESCLHHL GKGDSYIKDE ESIFSVETVE GSLWSHLGPD RVFKFNGQSD GNDVSLDLTL  240
GLVSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0079s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312397.21e-152LOB domain-containing protein 42
SwissprotQ9CA306e-70LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2K1ZFW61e-151A0A2K1ZFW6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11950.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-72LOB domain-containing protein 42