PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0079s0450.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family RAV
Protein Properties Length: 375aa    MW: 41748.6 Da    PI: 9.3708
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0079s0450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58.1e-1477125155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  SapurV1A.0079s0450.1.p  77 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDTAAQRFRG 125
                             89****9888.8*********3.....5**********99*************98 PP
2B3100.88e-32213314196
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+ tpsdv+k++rlv+pk++ae+h      ++ + +++ l led sg++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v 
  SapurV1A.0079s0450.1.p 213 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqstSSCSSKGVLLNLEDMSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVC 299
                             89*************************9887744445899*********************************************** PP

                             EEE-SSSEE..EEEE CS
                      B3  82 Fkldgrsefelvvkv 96 
                             F+++   e++l++ +
  SapurV1A.0079s0450.1.p 300 FQRSTGPEKQLYIDW 314
                             **8766777677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-977125IPR001471AP2/ERF domain
CDDcd000182.23E-2677132No hitNo description
SuperFamilySSF541711.83E-1777134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-2178133IPR001471AP2/ERF domain
SMARTSM003801.5E-2978139IPR001471AP2/ERF domain
PROSITE profilePS5103220.27178133IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-41205321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-31211318IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-30212303No hitNo description
PROSITE profilePS5086314.325213318IPR003340B3 DNA binding domain
PfamPF023624.9E-29213314IPR003340B3 DNA binding domain
SMARTSM010193.5E-25213318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDGSCIDEST TNSTDNSISI TPTNLTPSPS PSPSPSPTRA PTTKSPPESL CRVGSGNSVI  60
LDSESGVEAE SRKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAARAYDTAA  120
QRFRGRDAVT NFKLVNETED DEIEAAFLTS HSKAEIVDML RKHTYNDELE QSKRSHKSNN  180
GVNGKQHKNT ANYGSNSYDH GFDQALKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP  240
LQSTSSCSSK GVLLNLEDMS GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDIVCF  300
QRSTGPEKQL YIDWKARSGS NPAQPIQMVR LFGVNILNVP GMENGCNGKR SVREMELLSL  360
NHQYSKKQRI IGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5921032111121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0079s0450.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021709.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M51e-152RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2K1ZFR10.0A0A2K1ZFR1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-150RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]