PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0081s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 321aa    MW: 35588.7 Da    PI: 7.6381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0081s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-182976148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  SapurV1A.0081s0400.1.p 29 RGPWTPEEDELLANYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 76
                            89******************************99************97 PP
2Myb_DNA-binding476e-1587127648
                             HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0081s0400.1.p  87 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 127
                             89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-222078IPR009057Homeodomain-like
PROSITE profilePS5129416.7792476IPR017930Myb domain
SuperFamilySSF466893.56E-2926123IPR009057Homeodomain-like
SMARTSM007179.3E-142878IPR001005SANT/Myb domain
PfamPF002495.5E-162976IPR001005SANT/Myb domain
CDDcd001672.34E-113176No hitNo description
PROSITE profilePS5129424.39777131IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2479132IPR009057Homeodomain-like
SMARTSM007172.7E-1381129IPR001005SANT/Myb domain
CDDcd001673.13E-1187127No hitNo description
PfamPF002499.9E-1487127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRKPTSSTAT AEAAAAKSTP CCVKVGLKRG PWTPEEDELL ANYIKKEGEG RWRTLPKKAG  60
LLRCGKSCRL RWMNYLRPSV KRGQIAPDEE DLILRLHRLL GNRWSLIAGR IPGRTDNEIK  120
NYWNTHLSKK LISQGIDPRT HKPLNPQSSD QPKPSSSKAN HLQESLKEPI KTASSGLEET  180
TSGSSAHPII SNKENEYFQN NSNAHLDDQY HTDHFIASRG YTSLLNYDGS FGMDLRGNQR  240
LVNGEAEDIN SGTEDVFSFL NSLINEEAFQ QHQIFNEPNV NSAPASSSDP LFPIAATAFG  300
LTTVWESTLT PSALDQNESK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25271315108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0081s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303999.20.0transcription repressor MYB5
SwissprotQ388506e-83MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9GY740.0B9GY74_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-80myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]