PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0083s0230.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YA

Protein Properties

Length: 232aa MW: 25690.5 Da PI: 6.6001

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0083s0230.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103	2.8e-32	137	193	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh+hAlrR+Rg+gGrF SapurV1A.0083s0230.1.p 137 EEPVFVNAKQYHGILRRRQSRAKAESESKA-IKSRKPYLHESRHQHALRRARGCGGRF 193 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.3E-36	135	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.232	136	196	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.4E-27	138	193	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.8E-24	139	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	141	161	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.8E-24	170	193	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MHTIFQPSLC NWLEDLSFGT VCITAMTSSL HDRSDNSEAD EQQKESEPQI QSSFPAMAMA 60 HPGFSTPNVQ YATPQLGAGH AMAPAAYPYP DPYYRSIFAP YDPQPYPLQP YGAQPMVHLQ 120 LMGIQQAGVP LPSDAVEEPV FVNAKQYHGI LRRRQSRAKA ESESKAIKSR KPYLHESRHQ 180 HALRRARGCG GRFLNSKKKD DEEQNEVSSG DNSQSNINLN ADKNDSVSSN D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-22	136	200	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0083s0230.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182693	5e-75	AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence.
GenBank	AC187864	5e-75	AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024448163.1	1e-131	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	2e-68	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2K2C9T0	1e-130	A0A2K2C9T0_POPTR; Uncharacterized protein
STRING	POPTR_0001s38100.1	1e-128	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-55	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	SapurV1A.0083s0230.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]