PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0084s0570.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 270aa MW: 29757.6 Da PI: 6.1648

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0084s0570.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.5	3.3e-15	21	70	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E++RR++iN++f+ Lr+l+P++ ++K + a+ L +++ Y+++Lq SapurV1A.0084s0570.4.p 21 RSKHSVTEQKRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIAYVQYLQ 70 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-20	17	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-18	17	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.561	19	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-14	21	74	No hit	No description
Pfam	PF00010	1.5E-12	21	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-11	25	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MIWDLYSEAD EKNSDKANAI RSKHSVTEQK RRSKINERFQ ILRDLIPHSD QKRDTASFLL 60 EVIAYVQYLQ EKVQKYEGPY PGWSPEPAKL MPWRNSHWRL QSIAGHPQAT INGSDPGAVF 120 PGKFDENNIS LTPAMLPNTP NLIESDHVTC KVLEHQPELA NKIVHLPMPA PVRSDGLAAP 180 PLEQPVSDAQ SAECPITSEM LNQQELAIEA GTISISGVYS QELLNTLTQA MQSAGIDLSQ 240 ANISVQIDLG KRANRGLASG TSTSKVRGW*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0084s0570.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009409.1	1e-170	PREDICTED: transcription factor BIM2
Swissprot	Q9CAA4	1e-102	BIM2_ARATH; Transcription factor BIM2
TrEMBL	B9HWU2	1e-168	B9HWU2_POPTR; Uncharacterized protein
STRING	POPTR_0010s14740.1	1e-169	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-104	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0084s0570.4.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]