PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0086s0290.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 219aa    MW: 24863.5 Da    PI: 6.7339
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0086s0290.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.36e-10175194120
                    GATA   1 CsnCgttkTplWRrgpdgnk 20 
                             Cs C+tt+TplWR+gp+g+k
  SapurV1A.0086s0290.2.p 175 CSDCNTTSTPLWRSGPRGPK 194
                             ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.18E-5169193No hitNo description
SMARTSM004012.2E-4169217IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.658169192IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-7173194IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.6E-7175194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTPAYLNPAS SSFPFVDLRE DQQNLQLFLS PHQAATSLSG PTNVFNTSTH DHQRETKPGE  60
LRQQDDQEVD MYSISHGRSS DHKLFRSSCF HPEVNDHNNS NFHNSFSSKM EDEAEESGES  120
SVKWMPSKMS LMQKMTTSNC SEIDHKPMKF MLKFHSQQYQ NNEINSSSNS NIRVCSDCNT  180
TSTPLWRSGP RGPKVFFGLF THELFNNAVI CIKQFAKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0086s0290.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308561.21e-102GATA transcription factor 21
TrEMBLA9PGX11e-100A9PGX1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24560.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-12cytokinin-responsive gata factor 1