PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0087s0150.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 240aa    MW: 27710.4 Da    PI: 10.617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0087s0150.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.4e-13556147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                            +++WT eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
  SapurV1A.0087s0150.5.p  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQRDPEfnpylYSRSNIDLKDKWRNM 56
                            79************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.812161IPR017930Myb domain
SuperFamilySSF466894.56E-15259IPR009057Homeodomain-like
SMARTSM007171.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-14556IPR009057Homeodomain-like
PfamPF002494.2E-9556IPR001005SANT/Myb domain
CDDcd116604.48E-19657No hitNo description
Gene3DG3DSA:1.10.10.106.3E-14113178IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-13113177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005265.6E-18114178IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.111116198IPR005818Linker histone H1/H5, domain H15
PfamPF005383.2E-10118175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQRDPEFNPY LYSRSNIDLK DKWRNMTVSA  60
GSQSVKDKSR TLKARPNPDA AAHVAASTPL SNPHSSAAAD DVVFDDSSEA AADSKTAPKY  120
NAMIFEAISA LNEPNGADTS AIISYIERRQ ELPQNFRRQL SSRLRRLLAQ EKLEKKQQMM  180
LHIWLQKQKT NHLLQLKRLR SQRGFQRWLR MQIHCYSWPT RYLRNVHEVR LWSWDEIRA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0087s0150.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371994.11e-105telomere repeat-binding factor 4
RefseqXP_024445699.11e-105telomere repeat-binding factor 4
SwissprotF4I7L16e-52TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLB9N5F41e-103B9N5F4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07040.11e-104(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.18e-46MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]