PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0090s0750.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 465aa    MW: 52377.4 Da    PI: 5.8166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0090s0750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-1775163298
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             +k ++ps+v++  +l lpk+f+e++  k  +++ ++lede+g+s+e k+    ++ +  l++GW++F  ++++ egD+++F+l++  
  SapurV1A.0090s0750.1.p  75 IKHMLPSNVTRVFWLHLPKRFCEAYLPK--KDTIIVLEDEKGKSYETKY--LAHKAG--LSGGWRGFSIDHKIMEGDVLIFHLVEPA 155
                             68899********************533..5679***************..666655..9**********************98755 PP

                             EE..EEEEE- CS
                      B3  89 efelvvkvfr 98 
                             +f  +v ++r
  SapurV1A.0090s0750.1.p 156 KF--KVYIVR 163
                             55..887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2467165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-2167164IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-2672163No hitNo description
PROSITE profilePS5086313.35274165IPR003340B3 DNA binding domain
SMARTSM010195.1E-2074165IPR003340B3 DNA binding domain
PfamPF023622.4E-1575163IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAVLQANKQK EKQARPPKVK GIKKVPSNVS MKSESHTSKR AKIEDLYDNE EVKSDVMMRV  60
KETQSILSPE FPSIIKHMLP SNVTRVFWLH LPKRFCEAYL PKKDTIIVLE DEKGKSYETK  120
YLAHKAGLSG GWRGFSIDHK IMEGDVLIFH LVEPAKFKVY IVRVNDSEEV DGALALLKLE  180
AGVKQMGPID SSEEVDGALG LLKLEAAIKQ MTPVNEAVHV EKLSRVSEEM EDLHFEHLLQ  240
DNPEKNNEMN VKLACLNNFG PTSDLYEYES EDLGSETTGG IRLSKSAVDF KEVKCFEDFD  300
ITVNGLVINS ELSKHLQTKY YELCCCQNSF LHEHLLDGLN CKLVVGMLSE TINIADAIRA  360
SKLITSLENL AIWEKTLKAF EGLGMNVGFL LARLRQLMHL SDKSKRYEEA TLERVNAKEE  420
MTALEAKLLE VKDTINRLGV EIEKLVVGSE NLEPKFQEVA KAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0090s0750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464278.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A2K1Z5S40.0A0A2K1Z5S4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein