PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0091s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family DBB
Protein Properties Length: 204aa    MW: 22800.7 Da    PI: 6.3816
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0091s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07333434
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                            + C+ +e+  ++lfC  ++  lC++C ++ H
  SapurV1A.0091s0200.1.p  3 MLCDVCESGAAILFCAADEAALCRSCDEKVH 33
                            78******88******************998 PP
2zf-B_box26.11.7e-085291237
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                            + ++C+ +e+ ++ ++Ce ++  lC +C +  H g    H
  SapurV1A.0091s0200.1.p 52 DVPRCDICENAPAFFYCEIDGISLCLQCDMIVHVGgkrtH 91
                            5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.096147IPR000315B-box-type zinc finger
SMARTSM003363.0E-7147IPR000315B-box-type zinc finger
PfamPF006432.3E-5341IPR000315B-box-type zinc finger
CDDcd000215.27E-6445No hitNo description
SMARTSM003363.6E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7025196IPR000315B-box-type zinc finger
PfamPF006433.0E-65285IPR000315B-box-type zinc finger
CDDcd000216.59E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRMLCDVCES GAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEI DGISLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPVC TEEQGQQPLD  120
HNETRRDQNQ PSKLTARENQ QNLRASPAPM VENNTDSDGK MDNKLIDLNS RPQRIHGQNS  180
TNQESHEFSS LAPVGFFKRE PQK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0091s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306138.11e-137B-box zinc finger protein 19 isoform X1
RefseqXP_024454836.11e-137B-box zinc finger protein 19 isoform X1
RefseqXP_024454837.11e-137B-box zinc finger protein 19 isoform X1
SwissprotC0SVM56e-83BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB9H0Y01e-135B9H0Y0_POPTR; DBB family protein
STRINGPOPTR_0004s16950.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-85DBB family protein