PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0091s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family DBB
Protein Properties Length: 200aa    MW: 21942.2 Da    PI: 6.4943
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0091s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-06345440
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                             +C+ +++ e++ fC  ++  lC+ C    H+       H++ 
  SapurV1A.0091s0350.1.p  3 IRCDVCDSVEATVFCCADEAALCHGCDHRVHHAnklarkHSRL 45
                            58******99*******************96444777777765 PP
2zf-B_box162.5e-0561831838
                zf-B_box 18 CedCqqllCedClleeHkg..Ht 38
                            C++++  lC++C l++Hk   Ht
  SapurV1A.0091s0350.1.p 61 CQEDRAILCRECDLSIHKAneHT 83
                            *****************878875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
CDDcd000211.01E-5347No hitNo description
SMARTSM003363.3E-5447IPR000315B-box-type zinc finger
SMARTSM003365.8E-65391IPR000315B-box-type zinc finger
CDDcd000212.12E-46191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKIRCDVCDS VEATVFCCAD EAALCHGCDH RVHHANKLAR KHSRLSLVHP SFKEPPLCDI  60
CQEDRAILCR ECDLSIHKAN EHTQKHSRFL LTGVKLSASS SLHTASSTTT NNFDANINTN  120
RNHQPRLQKP SSASNEIFSS PSVETASATT AYSFDDNHVS DNGSISTSSI SEYLETVPGW  180
RIDDLLDPSF SSNNGCNFF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0091s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454941.11e-120B-box zinc finger protein 20 isoform X1
SwissprotQ0IGM72e-57BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A2K2AVH01e-119A0A2K2AVH0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16810.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.17e-54DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]