PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0093s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 331aa    MW: 37672.4 Da    PI: 4.8018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0093s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.63.3e-5561331128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrFhPtdeelvv+yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf s+rdkky++g+r+nratk+gyWka
  SapurV1A.0093s0260.1.p   6 LPPGFRFHPTDEELVVYYLDRKINGRTVEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFLSPRDKKYPNGSRTNRATKAGYWKA 91 
                             79*************************999.99**************95334455777***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tgkd++v s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  SapurV1A.0093s0260.1.p  92 TGKDRPVSS-QKRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                             ********9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-634157IPR003441NAC domain
PROSITE profilePS5100559.9636157IPR003441NAC domain
PfamPF023658.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV VYYLDRKING RTVELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFLSPR DKKYPNGSRT NRATKAGYWK ATGKDRPVSS QKRPVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIDSLCGA ASSSLKDSYA LCRVFKKTIH IPKPKEEENN GNDREKDAAA  180
VSEVQLLGDD TVSGIESSKG RDNADHRDEN FNNGYCKFPS ETSSSDVTQG TPIETAMPDD  240
LQPPFPSDEA ISSASLYSMG VDFSSNLIQD MQMPNCWSLQ YQFPFPPLEL KDFPQIGFTE  300
GMEPSKPEII DDYMMYRDCM NGIFEENFYL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-58115712165NO APICAL MERISTEM PROTEIN
1ut4_B4e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_A4e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_B4e-58115712165NO APICAL MERISTEM PROTEIN
3swm_A6e-58115715168NAC domain-containing protein 19
3swm_B6e-58115715168NAC domain-containing protein 19
3swm_C6e-58115715168NAC domain-containing protein 19
3swm_D6e-58115715168NAC domain-containing protein 19
3swp_A6e-58115715168NAC domain-containing protein 19
3swp_B6e-58115715168NAC domain-containing protein 19
3swp_C6e-58115715168NAC domain-containing protein 19
3swp_D6e-58115715168NAC domain-containing protein 19
4dul_A4e-58115712165NAC domain-containing protein 19
4dul_B4e-58115712165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0093s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878611e-112AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014226.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ9FFI54e-90NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A2K1YVR40.0A0A2K1YVR4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-102NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]