PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0093s0420.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 394aa    MW: 43305.7 Da    PI: 7.9762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0093s0420.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-112448226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                            +++ C +++ t tCk+Gd+CkF H+
  SapurV1A.0093s0420.2.p 24 GEKDCAHYMLTRTCKFGDTCKFDHP 48
                            7889********************9 PP
2zf-CCCH32.51.4e-1075101127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++ C++f++t  CkyG +CkF+H++
  SapurV1A.0093s0420.2.p  75 PGEPDCPYFMKTYRCKYGLNCKFNHPK 101
                             5789*********************96 PP
3zf-CCCH34.43.7e-11125147527
                             --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              C f+++tG Ck+G++CkF+H++
  SapurV1A.0093s0420.2.p 125 HCAFYMKTGKCKFGASCKFHHPK 147
                             5********************96 PP
4zf-CCCH37.93.1e-12201225327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++ C+f+++tG CkyG++C+++H++
  SapurV1A.0093s0420.2.p 201 EVDCPFYLKTGSCKYGATCHYNHPE 225
                             689********************96 PP
5zf-CCCH33.95.4e-11282306226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             ++ +C+f++rtG+Ck+G rC + H+
  SapurV1A.0093s0420.2.p 282 GQTECDFYMRTGECKFGVRCMYDHP 306
                             6789********************8 PP
6zf-CCCH40.25.8e-13338359627
                             -SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                             C+++++tGtCkyG++CkF H+p
  SapurV1A.0093s0420.2.p 338 CPYYMKTGTCKYGATCKFDHPP 359
                             ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8872250IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012249IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-82448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-52549IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-42847IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.04274102IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-474101IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-876101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-579104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-480102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676120148IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6123148IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9124147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5126146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314198226IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6198225IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10201225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5204225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5280309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892280308IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5280307IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8282306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4286306IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666332360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6336359IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10338359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6338357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVLMFLPPLN RLFLALNALL KRPGEKDCAH YMLTRTCKFG DTCKFDHPVW VPEGGIPDWK  60
EIPLIATSEN FPERPGEPDC PYFMKTYRCK YGLNCKFNHP KEKLFLGASE NSSVSALPER  120
PSEPHCAFYM KTGKCKFGAS CKFHHPKDIQ IPLSGLGNDN GVQTDSVVKN EEITGDFNMI  180
NSPVTPALLH NSKGLPIRVG EVDCPFYLKT GSCKYGATCH YNHPERTAIN PPAAAIGHPI  240
IAPSMANRNF GVFNPAASIY QTIDPRLSML GVGPTFYPQR PGQTECDFYM RTGECKFGVR  300
CMYDHPIDRS APTEKQIQQQ TVKLTLAGLP RREGAVHCPY YMKTGTCKYG ATCKFDHPPP  360
GEVMAIATSL DAAVLGAEAG IAHAQWEGGS SHG*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0093s0420.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320646e-45CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014515.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-163C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3N7FSU10.0A0A3N7FSU1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18390.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-159floral homeotic protein (HUA1)