PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0093s0420.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 354aa    MW: 38672.5 Da    PI: 8.1712
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0093s0420.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-103561127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                            ++++ C++f++t  CkyG +CkF+H++
  SapurV1A.0093s0420.3.p 35 PGEPDCPYFMKTYRCKYGLNCKFNHPK 61
                            5789*********************96 PP
2zf-CCCH34.63.2e-1185107527
                             --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              C f+++tG Ck+G++CkF+H++
  SapurV1A.0093s0420.3.p  85 HCAFYMKTGKCKFGASCKFHHPK 107
                             5********************96 PP
3zf-CCCH382.7e-12161185327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++ C+f+++tG CkyG++C+++H++
  SapurV1A.0093s0420.3.p 161 EVDCPFYLKTGSCKYGATCHYNHPE 185
                             689********************96 PP
4zf-CCCH34.14.7e-11242266226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             ++ +C+f++rtG+Ck+G rC + H+
  SapurV1A.0093s0420.3.p 242 GQTECDFYMRTGECKFGVRCMYDHP 266
                             6789********************8 PP
5zf-CCCH40.35.1e-13298319627
                             -SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                             C+++++tGtCkyG++CkF H+p
  SapurV1A.0093s0420.3.p 298 CPYYMKTGTCKYGATCKFDHPP 319
                             ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.5E-43461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0423462IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-83661IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-44062IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-480107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67680108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-683108IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-984107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-586106IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314158186IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-10161185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6162186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5164185IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892240268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5240269IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8242266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4246266IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666292320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6296319IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10298319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-6298317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVLMFLPPLN RLFLALNALL KIPLIATSEN FPERPGEPDC PYFMKTYRCK YGLNCKFNHP  60
KEKLFLGASE NSSVSALPER PSEPHCAFYM KTGKCKFGAS CKFHHPKDIQ IPLSGLGNDN  120
GVQTDSVVKN EEITGDFNMI NSPVTPALLH NSKGLPIRVG EVDCPFYLKT GSCKYGATCH  180
YNHPERTAIN PPAAAIGHPI IAPSMANRNF GVFNPAASIY QTIDPRLSML GVGPTFYPQR  240
PGQTECDFYM RTGECKFGVR CMYDHPIDRS APTEKQIQQQ TVKLTLAGLP RREGAVHCPY  300
YMKTGTCKYG ATCKFDHPPP GEVMAIATSL DAAVLGAEAG IAHAQWEGGS SHG*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0093s0420.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320645e-45CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014515.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-132C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1YVV10.0A0A2K1YVV1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18390.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-129floral homeotic protein (HUA1)