PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 252aa    MW: 27812.7 Da    PI: 9.4067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WTt Ed ll+++++ +G g+W++ a++ g+ R++k+c++rw++yl
  SapurV1A.0094s0010.1.p 14 RGPWTTKEDTLLINYIQAHGEGHWRSLAKKAGLLRCGKSCRLRWLNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding25.53e-0867101137
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                             rg+ T++Ed+l+++++ +lG++ W++Ia ++  ++  
  SapurV1A.0094s0010.1.p  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRFK-RLMK 101
                             7999******************.*****9998.6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-22664IPR009057Homeodomain-like
PROSITE profilePS5129421.248965IPR017930Myb domain
SMARTSM007175.2E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
SuperFamilySSF466892.65E-251592IPR009057Homeodomain-like
CDDcd001675.47E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.6E-136597IPR009057Homeodomain-like
PROSITE profilePS512947.1566110IPR017930Myb domain
SMARTSM007170.3266103IPR001005SANT/Myb domain
PfamPF002491.2E-667102IPR001005SANT/Myb domain
CDDcd001670.006687193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRAPYCSKD GLYRGPWTTK EDTLLINYIQ AHGEGHWRSL AKKAGLLRCG KSCRLRWLNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRFKRLM KNSTAGNKSQ CMGGSAGKRR  120
GDKRKQKEDS DGISGRNGEA AAKIKIYLPK AIKACPSSCT KNLSNIQSMI GSSPRNVEVV  180
DHIMSGLKAA NNGGQGWGSN NEELDGLVWD LDSSYPIPLQ NDIMLDDIFG EFQQLLKEDG  240
IMDSFVDSLL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-171210225118MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124RRGDKRK
2118125RRGDKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0094s0010.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026986.11e-125PREDICTED: myb-related protein P-like
TrEMBLB9GL111e-122B9GL11_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11100.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-46myb domain protein 7