PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0094s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 281aa MW: 30757.3 Da PI: 9.1874

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0094s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr +PvGgg+rknk+ss SapurV1A.0094s0030.1.p 37 KEQAINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSS 97 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	30	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.658	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIVA NTCSKPPASK RKARPQKEQA INCPRCNSTN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTEGGS LRSIPVGGGS RKNKRSSASS SSKKLPNLIS PPALSQTSTE 120 NHRIHEGQDL NLAFPGTQGI RSFTELIQFP SINESNNKTP IASSTSASNN TSQLSALELL 180 TGISSRGLNS FPMPVHQDPS TLYTSGFPLQ DFKQTLSFSL DGLGSGYGSL QGVRETNGRL 240 LFPFEDLKQQ VSSTADIEQQ NKEHGDSTGY WTGMLGGGSW *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0094s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443920.1	1e-180	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	2e-71	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A3N7FWL4	1e-179	A0A3N7FWL4_POPTR; Uncharacterized protein
STRING	POPTR_0003s14450.1	1e-166	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-62	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0094s0030.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]