PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 194aa    MW: 22675.2 Da    PI: 9.8317
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.7e-201769456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            +++f++eq++ Le +Fe+++ p  +++++LA++lgL+ rqV++WFqNrRa+ +
  SapurV1A.0094s0260.1.p 17 KRRFSDEQIKFLEFMFESESRPESRTKQQLAMELGLEPRQVSIWFQNRRARLR 69
                            679************************************************88 PP
2HD-ZIP_I/II108.84e-3516107293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             +krr+s+eq+k+LE +Fe+e++ e++ K++la eLgl+prqv +WFqnrRAR +tkq+Ek+y+ Lk++yd l+++ e+L++e ++L 
  SapurV1A.0094s0260.1.p  16 NKRRFSDEQIKFLEFMFESESRPESRTKQQLAMELGLEPRQVSIWFQNRRARLRTKQIEKEYSILKASYDVLASSFESLKRERQSLI 102
                             79************************************************************************************9 PP

             HD-ZIP_I/II  89 eelke 93 
                              +l++
  SapurV1A.0094s0260.1.p 103 IQLQK 107
                             99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-18873IPR009057Homeodomain-like
PROSITE profilePS5007117.7181171IPR001356Homeobox domain
SMARTSM003895.4E-161475IPR001356Homeobox domain
CDDcd000861.63E-131772No hitNo description
PfamPF000461.7E-171769IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-191878IPR009057Homeodomain-like
PRINTSPR000315.0E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000315.0E-65167IPR000047Helix-turn-helix motif
PfamPF021831.7E-1671111IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDRGPHPLSS IQKNANKRRF SDEQIKFLEF MFESESRPES RTKQQLAMEL GLEPRQVSIW  60
FQNRRARLRT KQIEKEYSIL KASYDVLASS FESLKRERQS LIIQLQKLKN RPVKQHGSRN  120
CGSQLGSSRD GRFENKDSDS ESKEKPSSQL DGNGREENRP WSDTNSRNTV NTMEEIDILN  180
QTDTSSQWWE FWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0094s0260.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2328150.0CU232815.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297947.11e-115homeobox-leucine zipper protein ATHB-7
SwissprotP468974e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLB9GK741e-114B9GK74_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11380.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16057910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-39homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]