PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0580.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 350aa    MW: 37280.2 Da    PI: 10.394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-1287132247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++WT+eE+  ++ +   lG+g+W+ I++++  +Rt+ q+ s+ qky
  SapurV1A.0094s0580.1.p  87 KPWTEEEHRTFLSGLSNLGKGDWRGISKKFVITRTPSQVASHAQKY 132
                             58*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.11781137IPR017930Myb domain
SuperFamilySSF466898.22E-1682137IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1684136IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.4E-1185131IPR009057Homeodomain-like
SMARTSM007175.8E-1085135IPR001005SANT/Myb domain
PfamPF002492.2E-1187132IPR001005SANT/Myb domain
CDDcd001672.83E-888133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVKEAARKCS HCGHNGHNSR TCAKDCIKLF GVSIEKREQT IKGSASLDNI ASLDDSNGAH  60
HGDPGYSSDG VIGSKRGKTA STRKKGKPWT EEEHRTFLSG LSNLGKGDWR GISKKFVITR  120
TPSQVASHAQ KYFLRQQTSY EKKKRRSSLF DMTFKGTDMA SYQDAPKLPI IRTNCGSSSQ  180
ASTSSASPLR KAGEDILSHA ISPLHLINQF PLLCLQNPQV TSPTVAAGTG VSNYNPGMQR  240
ILVNGRRSFP ASKAIPAAPF VSMMNYPTAY HPNMLKSPSS LVGCAPRIAH QPPAGIPSPS  300
SFPHSFSAEG ASTSSAKLED PLELKIGQPP KSPQGANLSP PSSGAISVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0094s0580.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297928.10.0probable transcription factor At5g61620
TrEMBLB9GK380.0B9GK38_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-57MYB_related family protein