PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0095s0590.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 182aa    MW: 20231.2 Da    PI: 8.9269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0095s0590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164870123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C++ F++   L  H  +H
  SapurV1A.0095s0590.1.p 48 FECKTCNRQFPSFQALGGHRASH 70
                            89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.9E-946115No hitNo description
PfamPF139123.0E-134772IPR007087Zinc finger, C2H2
SMARTSM003550.164870IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139122.0E-992116IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91293115IPR007087Zinc finger, C2H2
SMARTSM003550.593115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKRGFHEREI DNITMANCLM ILSRGRESYS FPPFDPALMS QNSPSRVFEC KTCNRQFPSF  60
QALGGHRASH KKPRLMGGDG SFETQSPAKP KTHECSICGL EFAIGQALGG HMRRHRVASL  120
NDQNQVDPLS PPSIDRQQVV PLVKRSNSRN VLCLDLNLTP YENDMELFKL GKAAPAVNCF  180
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0095s0590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7005231e-161JN700523.1 Populus trichocarpa C2H2-type zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465761.11e-112zinc finger protein ZAT11
TrEMBLG8IEK91e-110G8IEK9_POPTR; C2H2 family protein
STRINGPOPTR_0010s21650.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-39C2H2 family protein