PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0098s0030.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 460aa    MW: 50718.6 Da    PI: 6.5657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0098s0030.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09262308455
                             HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             +h   Er+  +++N++f  L++++P+ +      K++K++iL  ++eY+++L+
  SapurV1A.0098s0030.3.p 262 SHVLSERKQKEKLNKRFMILKSIVPSiS------KVDKVSILDDTIEYLQELE 308
                             78899*********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15261322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7262308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14262321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-10262312No hitNo description
SMARTSM003535.4E-11264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MRGVVELGVT EQVLEDPSLI HHIKTSFLEI PYAVAAKNSS ARSDKELVCA TFNRETLDTK  60
PIPVIGCGEL DITSPTRNSN DQPAADSIMV EGLQGGASQV QSRQFMYDDF STSVHHSLNS  120
SDCISQTIVD PVRAVPILKN GKVIDQNLLD VQDCNHTKLT PLDLQSDDFH YQSVLSCLFK  180
TSNALILGPN VQNCHQESSF VSWKKAGLVL THKLKSETQQ KILKKILLEV PRMHADGLLD  240
SPEYNSNKVA VGTPEADENG ASHVLSERKQ KEKLNKRFMI LKSIVPSISK VDKVSILDDT  300
IEYLQELERK VEELGSSREL LEVLTKRKPQ DTAERTSDNY GSNKIGNGKN SLTNKRKAPG  360
IDEMEPDMNH NVSKDGSADN ITVSMNKEDV LIEIKCLWKE GILLEIMDVA SHFHLDSHSV  420
QSSTMDGILS LTIKSKHKGL NAVSTGTIKQ ALRRVAGKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0098s0030.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233950.0KP723395.1 Populus tremula x Populus tremuloides clone INRA 353-38 GL3-like basic helix-loop-helix transcription factor (bHLH079) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445100.10.0transcription factor GLABRA 3
TrEMBLA0A2K2BVJ70.0A0A2K2BVJ7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09450.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-114bHLH family protein