PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0099s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 240aa    MW: 27812.8 Da    PI: 9.9918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0099s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.2e-32104162159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK vk+s++prsY+rCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  SapurV1A.0099s0270.1.p 104 LDDGYRWRKYGQKAVKNSKYPRSYFRCTHHSCNVKKQVQRLSRDTSMVVTTYEGVHNHP 162
                             59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3390162IPR003657WRKY domain
SuperFamilySSF1182901.24E-2896163IPR003657WRKY domain
PROSITE profilePS5081128.97799164IPR003657WRKY domain
SMARTSM007745.0E-39104163IPR003657WRKY domain
PfamPF031064.5E-26105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEAPPPQLAP SQNPYSYLLL PPPSSLHPSM TEPDHVLSDI DWVGLLSGQS QLGEERPAVE  60
RASMVAENGA EEEKGDRDEK KGGRMKKATR PRFAFQTRSE DDILDDGYRW RKYGQKAVKN  120
SKYPRSYFRC THHSCNVKKQ VQRLSRDTSM VVTTYEGVHN HPCDKLMETL TPLLKQMQFL  180
ARFYAHSQEQ TKQALLFSAI FYFLRQYIRN FNFDYQKTSI RQKLYKKKKK VFQVLVVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2594161774Probable WRKY transcription factor 4
2lex_A2e-2594161774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0099s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774391e-171GQ377439.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301377.21e-100probable WRKY transcription factor 43
TrEMBLC9DI083e-99C9DI08_9ROSI; WRKY transcription factor 19
STRINGEOX958541e-85(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.15e-54WRKY DNA-binding protein 43