PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0101s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 226aa    MW: 25483.6 Da    PI: 6.8593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0101s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-10160207455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+++Er RR++iN+++  L++l+P +    +k +  a +Le+ ++Y++sLq
  SapurV1A.0101s0180.1.p 160 SHSIAERVRREKINNKLRCLQDLVPGC----HKSMGMAVMLEEIINYVHSLQ 207
                             8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.37E-10154211No hitNo description
SuperFamilySSF474594.32E-17154221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-17156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-9162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAEFAEYQQR FRPSQPLTEM MDMNMEILKH LPDLNPSILE SFSTTEFSAD SLLAHQQPEF  60
TATYNHNNLS STFHPDILST TTAVHTVTLN QNGTHETKKR KSKEQSTRSY KNISPTDSSN  120
ETKKKNSLGG GKKGENRDKE VDQTEEVIHV RAKRGQATDS HSIAERVRRE KINNKLRCLQ  180
DLVPGCHKSM GMAVMLEEII NYVHSLQNQV EFLSMELATA SCSVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0101s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383447.11e-143transcription factor bHLH75
TrEMBLU5GG631e-142U5GG63_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15590.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.18e-42bHLH family protein