PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0102s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GeBP
Protein Properties Length: 341aa    MW: 38335 Da    PI: 8.2201
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0102s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57380.33e-2570165297
                  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87 
                             +f+r+wse Dei +LqGl++  +++g s  +d+  fy+ +++s+s  ++ksql+eK+rrL+kKf+  +++ a++g + s+ ++hd+ 
  SapurV1A.0102s0130.1.p  70 KFHRIWSEPDEINFLQGLLSS-SSQGFSFPNDLPFFYDRFSNSVSQPYTKSQLSEKLRRLRKKFRSTSSRlARNGFNYSLLSPHDRA 155
                             699****************98.889*9*99****************************************88999************ PP

                  DUF573  88 ifelskkiWg 97 
                              f+lsk++W 
  SapurV1A.0102s0130.1.p 156 LFHLSKQLWS 165
                             *********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-2771165IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDSTPVPQHL PFKSSSSSSA SKLPIKRKTP DSLHHHHLLS PKLENYSTTT NPDAFSTLDT  60
NFESKPPPFK FHRIWSEPDE INFLQGLLSS SSQGFSFPND LPFFYDRFSN SVSQPYTKSQ  120
LSEKLRRLRK KFRSTSSRLA RNGFNYSLLS PHDRALFHLS KQLWSPEFDP SSPIGGNKST  180
GGNSNSNFDG NMSSARCDND KRTKLDEDLV CDKGSILPIF GSPCANVNVS NELNDLESLD  240
LDEFDDGYIV KMREGNVGWE VDKGVSGCGS VAVKSVAKNV LNVFDECLNE VKKVVLKERL  300
DSSMEGKKEK DFQRRWREQR VAEFDVLALR LRLLLDNSAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0102s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002792.11e-174PREDICTED: uncharacterized protein LOC105109709
TrEMBLA0A2K2AS021e-171A0A2K2AS02_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09000.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1654199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-11DNA-binding storekeeper protein-related transcriptional regulator