PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0103s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 249aa    MW: 27765.6 Da    PI: 5.5535
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0103s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1771.8e-55771811102
                   NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                             ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+di aa++
  SapurV1A.0103s0030.1.p  77 QLQMFWINQlqeIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIVAAIS 163
                             89******99999************************************************************************** PP

                   NF-YC  85 rtdifdflvdivprdelk 102
                             rtd+fdflvdi+prdelk
  SapurV1A.0103s0030.1.p 164 RTDVFDFLVDIIPRDELK 181
                             ***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-3364171IPR009072Histone-fold
PfamPF008085.2E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-36100177IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDQSEQTRQQ PIMGVVAGAG QMAYASTPYQ AAPMVASGTP SIAITSPTQP PATFSVSPHQ  60
LTYQQAQHFH HQQQQQQLQM FWINQLQEIE QTADFKNHSL PLARIKKIMK ADEDVRMISA  120
EAPVIFAKAC EMFILELTLR SWIHTEENKR RTLQKNDIVA AISRTDVFDF LVDIIPRDEL  180
KEEGLGVTKA TIPVGPPADL PYYYVPQLPV GPPGMIIGKP VDQAAAYEAQ QPQVPWLQTH  240
PQQQQSDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5783177195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0103s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2145980.0AC214598.1 Populus trichocarpa clone POP052-F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008715.11e-136PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008716.11e-136PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008717.11e-136PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008718.11e-136PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008719.11e-136PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008720.11e-136PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008721.11e-136PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG72e-78NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLB9HGM51e-133B9HGM5_POPTR; NF-YC family protein
STRINGPOPTR_0007s07830.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-79nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]