PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0108s0370.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HRT-like
Protein Properties Length: 505aa    MW: 56251.7 Da    PI: 9.9226
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0108s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like581.6e-18267297131
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                             iCG+i+ dG++Ckr+Pv+gRKRCeeHKG+R+
  SapurV1A.0108s0370.1.p 267 ICGFIMVDGITCKRPPVPGRKRCEEHKGRRV 297
                             8*****************************7 PP
2HRT-like48.51.5e-15331361131
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                             +CGv+l dG++C++ +v  RKRCe HKGm +
  SapurV1A.0108s0370.1.p 331 TCGVNLVDGTFCRKRAVALRKRCEDHKGMQV 361
                             7****************************75 PP
3HRT-like581.6e-18420449130
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                             +CGv+l++Gs+C+rqP++g+KRC++HKG+R
  SapurV1A.0108s0370.1.p 420 TCGVMLGNGSFCRRQPIQGNKRCWQHKGKR 449
                             7****************************9 PP
4HRT-like56.54.6e-18468498131
                HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                             iC ++l++GsvC r Pv+gRKRCe+HKGmR+
  SapurV1A.0108s0370.1.p 468 ICAATLNNGSVCLRAPVQGRKRCEQHKGMRV 498
                             8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAGCARLKRE DCKRTKHDSN FSKWQLLIGP SDWQDYFLGK EGASRYRVHN LPTTSGPGLY  60
ELGIVVSRST LPRRDVGKLV PDGMVVVYLG QADNVKTRLQ QYGRSGAHLG NTYSTGYVND  120
SKDDSLKTGL GLFEEIFSRG HSIVYRWASM KYKRDAEETE GQLLATFDYA WNKGCNGTRR  180
PSDVLQKLDK ITSKTSRPPN IFQRLPFFSH KQEGIKIKAS KPVSPEKCAG FGDEDSKKIF  240
SGIFKFSRSQ PRLVTDRHGF NEDIVCICGF IMVDGITCKR PPVPGRKRCE EHKGRRVYGA  300
SYKSITQGYL DYPHGANLLS TTHNGQEHET TCGVNLVDGT FCRKRAVALR KRCEDHKGMQ  360
VNTSVSEPAA EDKIRMPVLR GVSSSFSYSI NNSASSKHNA YSTSQCGSSN NPVKEHFPNT  420
CGVMLGNGSF CRRQPIQGNK RCWQHKGKRA DCNLSGVDSS LPRFDAPICA ATLNNGSVCL  480
RAPVQGRKRC EQHKGMRVST SYHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0108s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460011.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A2K2A2P60.0A0A2K2A2P6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-114effector of transcription2