PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0111s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 406aa    MW: 45227.9 Da    PI: 7.8744
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0111s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-094666526
                            --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            +C f+++ G+C+yG+rC++ H+
  SapurV1A.0111s0160.1.p 46 ICTFYQK-GICSYGSRCRYDHV 66
                            7******.*************7 PP
2zf-CCCH216.1e-07153175326
                             S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                             +++C+ fa+ G C++Gd+C+ +Hg
  SapurV1A.0111s0160.1.p 153 RSICS-FAAAGSCPRGDKCPHIHG 175
                             67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.8E-41439IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-61738IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0841840IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5354168IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-44267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-54465IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44665IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-74666IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056150177IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022151176IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4155175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.0E-10214278IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.15E-9215285No hitNo description
CDDcd001627.92E-4218278No hitNo description
SMARTSM001842.4E-7219276IPR001841Zinc finger, RING-type
PfamPF000973.1E-7219276IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.297219277IPR001841Zinc finger, RING-type
PROSITE patternPS005180243252IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.14306334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619306335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGFCFLLLLF FVWFWGVLCK FFAHGACLKG EHCEFSHDWK DPPNNICTFY QKGICSYGSR  60
CRYDHVKPSR PESTASSSLT VPCQPLGSNA VSLALPARNV SNGVTTVLGA PSELSSRPFI  120
APATPTLNLE SAQHDFLEDG EVIEPRNVKP ADRSICSFAA AGSCPRGDKC PHIHGDLCAY  180
CGKHCLHPFR PEERDEHLKA CEKKQKNLDL LKYSQEIECS VCLDRVLSKS TAAERKFGLL  240
SECDHPFCIS CIRNWRSSSP TTGMDVNTSL RACPICRKLS YFVIPSVIWY SSKEEKQEIV  300
DTYKAKLRSI DCRHFDFGNG NCPFGTSCFY KHAYRDGRLE EVVLRHLGAD DGQTVIAKNI  360
WLSDFLGSLQ IRVSINVKTC TQLYCGRSQS PVPNHAVCLG FLLVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0111s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442390.0EF144239.1 Populus trichocarpa clone PX0011_J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441871.10.0putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_024441875.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-172C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K2C4A40.0A0A2K2C4A4_POPTR; C3H family protein
STRINGPOPTR_0009s06730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-161C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]