PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0112s0080.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

S1Fa-like

Protein Properties

Length: 73aa MW: 7879.62 Da PI: 10.6812

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0112s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	136.2	7.9e-43	7	72	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+gglll flvgny+ly+yaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe SapurV1A.0112s0080.1.p 7 DAEPKGLNPGLIVLLVIGGLLLSFLVGNYVLYMYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 72 6799*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.1E-40	8	72	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MGDVIKDAEP KGLNPGLIVL LVIGGLLLSF LVGNYVLYMY AQKTLPPKKK KPISKKKMKK 60 ERLKQGVSAP GE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0112s0080.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144583	1e-85	EF144583.1 Populus trichocarpa clone WS01111_F03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010852.1	3e-28	PREDICTED: DNA-binding protein S1FA
Swissprot	Q42337	2e-16	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	W9SCA3	8e-26	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	Lus10023177	1e-26	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Link Out ? help Back to Top
Phytozome	SapurV1A.0112s0080.1.p