PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0113s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 242aa    MW: 26774.4 Da    PI: 6.6311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0113s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003389111123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C k F ++  L  H++ H
  SapurV1A.0113s0130.1.p  89 FECQYCLKEFANSQALGGHQNAH 111
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-685116No hitNo description
Gene3DG3DSA:3.30.160.605.8E-685115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42789116IPR007087Zinc finger, C2H2
PfamPF139129.7E-689113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEKEASNILS SMLDGDQNGY FAESGAVGRK LKLFGFELSP YNESGMKGSA DQGDHESVNS  60
SNTESSERPE KPAKEKSSSA VREPDEKKFE CQYCLKEFAN SQALGGHQNA HKKERMKKRL  120
QFQARKASFG GYNYRYGSAS TSWFFDPEST LHDQESQISF SPYQDSGHLI NGSQISKWYA  180
VPADQVPFQQ DTHTRFTFSH AEGSRDKPSP FLASMEACKS LDLQLGLSLK TNFQSSSGTG  240
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0113s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034193.11e-107PREDICTED: zinc finger protein 5
TrEMBLA0A2K1ZJZ81e-105A0A2K1ZJZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s04580.17e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-14zinc finger protein 5