PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0117s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 333aa    MW: 36891.2 Da    PI: 7.4138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0117s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-0981106127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +kt+ C  f   GtC+ G++C+FaHg+
  SapurV1A.0117s0250.1.p  81 FKTRVCAKFKT-GTCRNGENCNFAHGM 106
                             69*******99.*************95 PP
2zf-CCCH29.71.1e-09145168225
                             -S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                             k++lC+ f+ + +C+yGdrC+F H
  SapurV1A.0117s0250.1.p 145 KMKLCKKFYNGEECPYGDRCNFLH 168
                             789*******66************ PP
3zf-CCCH42.51.1e-13230255126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +kt+lC  +  tG+C++G++C+FaHg
  SapurV1A.0117s0250.1.p 230 WKTKLCTKWEMTGQCPFGEKCHFAHG 255
                             8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-1477113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-879111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25380107IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-680106IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-781106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333143171IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4143170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-9145169IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7145168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-17224260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-10228260IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7229256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544229257IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-11230255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSYPDSPVSF MASQASYHSG SDAIDVCPQF VMNNNEQFEQ QHQPPYNRPR NSEDNSDQSM  60
SSRVPPTNSL PVHKGSTNIF FKTRVCAKFK TGTCRNGENC NFAHGMQDLR QPPPNWKELV  120
GGGASSEEDR STATNREDDL RIIHKMKLCK KFYNGEECPY GDRCNFLHED PANFREDTGR  180
FRESSAISIG TTGQLTGQGS GVFNAAEVNR PANTVVSDAS RSSLIKPVYW KTKLCTKWEM  240
TGQCPFGEKC HFAHGLAELQ IPGGRNEVEA GNADSTVTKT PTPVLPNNVS PSMSTVNVPS  300
LVEEKGTKCL LKWKGQKKIN RIYADWLDDL CH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0117s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014451.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
RefseqXP_011014452.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2
SwissprotQ9LT811e-91C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3N7EY470.0A0A3N7EY47_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-90C3H family protein