PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0118s0470.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 866aa    MW: 95501.6 Da    PI: 5.4837
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0118s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.31.5e-28485536152
                  RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             aek+++l++l++yFs+++kdAAk++gvc+T+LKriCR++GI+RWP+Rki+++
  SapurV1A.0118s0470.1.p 485 AEKTVTLNVLQQYFSGSLKDAAKSIGVCPTTLKRICRKHGISRWPSRKINKV 536
                             5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.029468556IPR003035RWP-RK domain
PfamPF020423.6E-26488536IPR003035RWP-RK domain
SuperFamilySSF542775.56E-20763848No hitNo description
Gene3DG3DSA:3.10.20.2408.1E-24764847No hitNo description
SMARTSM006662.0E-20764847IPR000270PB1 domain
PROSITE profilePS5174520.217764847IPR000270PB1 domain
PfamPF005647.3E-17765846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MLQQTDTHFS YPSDSIDADD LGARYNNGGG QQNRFLNTTY CITSQPVGPS LDERILRALS  60
LLKVSFGGGF LTQVWVPIRS GDQYMLSTSE QPYLLDQMLA GFREVSRTFT FSAEVKPGVP  120
LGLPGRVFIS KVPEWTSNVR YYREAEYLRA KHAVDHDVRG SFAIPIFDPD QMSCCAVLEL  180
VTVKEKPDFV SDMKNVCHAL EVVNLRSTAP PRLLPQCLSS IKRAVLSEIA DVLRAVCHAY  240
KLPLALTWMP CNYTEEAVDE MIKVRVRDSN SRSSGKCVLC IESSACYAYD REMQGFVHAC  300
AEHYIEEGQG IAGKAVQSNH PFFFPDVKTY DITEYPLVHH ARKYGLNSAV AIRLRSTYTD  360
DDDYILELFL PVNMKGSSDQ QLLLMNLSGT MQRICMSLRT VSDTKFVGQE CSEVGFPKEA  420
VLSFQPMSIS KGSFQNALSE GNLISASKML LNVSSSKNDQ MESNSFNEQT TSGSRRQVEK  480
KRSTAEKTVT LNVLQQYFSG SLKDAAKSIG VCPTTLKRIC RKHGISRWPS RKINKVNRSL  540
RKIQTVLDSV QGVEGGLKFN PTTGGFVAGG SMSQEFDHQN GFVSQGKILS IRNSEPADHD  600
VVSVLLASCT DGNNSIVKVE EDECLIGHVI DCSADPRSVA IDAGLCEQTS FGSGPWACLE  660
NDPTGSFAKA GNIGGMKNGG IVLENSDSRF VSQSSLSFAA AEEMDTKIEG DDGYVERNQP  720
TCSSTTDSSN GSGSIMHGST SSSPMFEERN HSEEKTSFGD GDLNITVKAR YREDTIRFKF  780
DPSAAGCFQL YEEVSKRFKL QTGTFQLKYL DDEEEWVMLV SDSDLLECLE IMENVGTRSV  840
KFLVRDTSFA MHSSSSSNFF LMGSS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0118s0470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2316381e-124CU231638.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461462.10.0protein NLP9
RefseqXP_024461463.10.0protein NLP9
SwissprotQ9M1B00.0NLP9_ARATH; Protein NLP9
TrEMBLA0A2K1ZTV00.0A0A2K1ZTV0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein