PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0118s0520.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 270aa    MW: 30388.7 Da    PI: 10.0356
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0118s0520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS79.56e-258726888271
                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAee 171
                              P++ f    + + Il+av g+++vH i f+ i+  l    L++ L ++    p  ++R     ++ s++++ l+e+   L+  A++
  SapurV1A.0118s0520.1.p  87 LPFVWFVEKSCHHSILDAVVGKKKVHAINFSnIEFDLLIGDLMRDLVKQWTVFPgkNIR-----PKLSNNEDYLQEMDLVLSAEAKT 168
                             69999*************************6599999**********998655512444.....3333489**************** PP

                    GRAS 172 lgv.pfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                             l++ +f+ n + ak+++ +  ++L++k+   +Ea++V+  ++lh+l   +++le+    vL+ +k+l+P+++v+ve+ea+hn+++ l
  SapurV1A.0118s0520.1.p 169 LRLtDFKVNHVFAKTVAGIVESTLNLKRaseDEAIVVKREFELHKLILLPGALEK----VLSKLKDLRPEIMVIVEKEANHNNPDIL 251
                             **946**************999999999999****************88999998....**************************** PP

                    GRAS 255 erflealeyysalfdsl 271
                             +r+++++ yys++fds+
  SapurV1A.0118s0520.1.p 252 DRLAQSFPYYSSVFDSM 268
                             ***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.4631269IPR005202Transcription factor GRAS
PfamPF035142.0E-2287268IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MICKKATQGL GSFLCPIGGG EHANMPPPST LPSRTTPRTK GNVVARGPGR KHRVLIKLGT  60
CLKEHGKIMN GIKTYILVKS IRCWRFLPFV WFVEKSCHHS ILDAVVGKKK VHAINFSNIE  120
FDLLIGDLMR DLVKQWTVFP GKNIRPKLSN NEDYLQEMDL VLSAEAKTLR LTDFKVNHVF  180
AKTVAGIVES TLNLKRASED EAIVVKREFE LHKLILLPGA LEKVLSKLKD LRPEIMVIVE  240
KEANHNNPDI LDRLAQSFPY YSSVFDSMY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0118s0520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460972.11e-107DELLA protein GAIP-B
TrEMBLA0A2K1ZTT21e-106A0A2K1ZTT2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01550.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1790237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.15e-31GRAS family protein