PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0122s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 300aa    MW: 33172.9 Da    PI: 4.6294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0122s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-194593355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  SapurV1A.0122s0040.1.p 45 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 93
                            67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-3444107IPR001471AP2/ERF domain
PROSITE profilePS5103220.70544101IPR001471AP2/ERF domain
CDDcd000181.14E-3044100No hitNo description
SuperFamilySSF541716.34E-2145102IPR016177DNA-binding domain
PRINTSPR003673.9E-84556IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2945101IPR001471AP2/ERF domain
PfamPF008475.9E-124793IPR001471AP2/ERF domain
PRINTSPR003673.9E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDFTQSTKTN STPSPSKTKR KQQQQQQQQQ QQKHQNQQEQ NEVRFLGVRR RPWGRYAAEI  60
RDPSTKERHW LGTFDTAEEA ALAYDRAARS MRGSKARTNF VYSDMPPASS VTSIISPDES  120
QHEIPALFAP PPQNHVHQND TNCQQQLYFS QDQYPFHAYG NSTSNLLADG EGWVQGFESG  180
AADGPGGSYE PNSAGSFDVT TEPSYFSSKD NIELPPLPPD VNSRCYGPEM DHGFWNDAGF  240
FGFQEEQKNN GNGLAISGSS LGFDSSDFSQ HGSLFEIMPP VSDSVTDGLD VGSSSTLYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1945100359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0122s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304632.11e-168ethylene-responsive transcription factor LEP
TrEMBLB9GYV01e-167B9GYV0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15940.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-35ERF family protein