PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0123s0310.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 199aa MW: 21858.1 Da PI: 8.2629

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0123s0310.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+++F ++ L H++ H SapurV1A.0123s0310.1.p 46 FPCLYCPRRFYTSQALGGHQNAH 68 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.55E-6	43	73	No hit	No description
PROSITE profile	PS50157	10.616	46	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0010582	Biological Process	floral meristem determinacy
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MADPSIFNFF NHQHQQYPSS SSSSPSSRPT KKSSTNLAQP SSSRHFPCLY CPRRFYTSQA 60 LGGHQNAHKR ERAALRRNNN TLNATISTDP SLIIPSPFLN HNLPPPASPP GVPFFNQYHR 120 FHQQALDHPM MITSYQFPTP PSTNGVYVSA PHYGGFYGVS AAATSLDHDI IGSGYDLSTS 180 TDNDDPNDPT NVDLTLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0123s0310.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298656.1	1e-115	protein LATE FLOWERING
TrEMBL	B9GFF8	1e-114	B9GFF8_POPTR; Uncharacterized protein
STRING	POPTR_0001s33210.1	1e-114	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15014	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	5e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0123s0310.1.p