PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0125s0380.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 737aa    MW: 82802.6 Da    PI: 6.4127
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0125s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.26e-27618667352
                  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ++isle+l++yF++++kdAA++L+vc+T+LKriCR +GI+RWP+R+ik++
  SapurV1A.0125s0380.1.p 618 QTISLEVLQQYFAGSLKDAAQSLDVCPTTLKRICRLHGIARWPSRQIKKV 667
                             79**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.95603687IPR003035RWP-RK domain
PfamPF020426.6E-24619667IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MDDHSASTPN SEFSIFSGNS MNWDFMDEIL YQGWPEENAG GFNFLHQGPY TSNFLNDPPL  60
YMPFFGSNYL SRASNQQIYQ EETERLCRGN PPLDYPTSME LVQTNSQVED SKETPTWLVP  120
STSSRVEATG LGVEWLTVPR VNPGISYSVK ERLIRAVGQL KYWVQDRDIL IQFWLPTEKE  180
GKNVLTTIDQ PHLVNSRCKS LASYRNVSTS YHFQAEEDSK DSVGFPGRVF LEELPEWTPD  240
VRFFRSEEYP QKEHAIQHNV RGSLALPLFK QGRETCLGIV EIVTTIQKMN YRPEIEDICK  300
ALEAVDLKSS EDFCSPGVKA CNGWYQVAAS EMLEILQSVC KKYGLPLALT WALCSRQGKH  360
GCQQFADKFS ACISTVNSAC FLADRDFSGF QMASSDQYVF LGQGIVGKAF TTQKQCFAAD  420
ITSFSKKNYP LAHHAKIFGL HAAIAIPLRS ISPGLVDFVV ELFLPKDCLD TEEQKKMWDL  480
LPIAMQEVCR SLQVVMDKEL DSGEYQGFES SVLKEPPPDE SSWIACMLKA QKKGINCGIT  540
RDCPQEPKEE FKVTTHLDSW KVLELDYKQV PSKLGQFQPD SGPNSNTEGD GVSSAFDRHH  600
SLGSRKKGKK RRTKTEIQTI SLEVLQQYFA GSLKDAAQSL DVCPTTLKRI CRLHGIARWP  660
SRQIKKVDHS LRKLQQVIET VQGAKGSIQI ESFYSAFPEL SSQKISSHDS SSSLKRNDNT  720
KNLYPPPDAS SSRTAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1608613KKRRTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0125s0380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033170.10.0PREDICTED: protein NLP2-like
RefseqXP_011033171.10.0PREDICTED: protein NLP2-like
TrEMBLB9IHW60.0B9IHW6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein