PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0125s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 852aa    MW: 94101.4 Da    PI: 6.2185
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0125s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.61.2e-28520570252
                  RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ek+isle+l+++F++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  SapurV1A.0125s0390.1.p 520 EKTISLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 570
                             79***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.177509590IPR003035RWP-RK domain
PfamPF020423.5E-25522570IPR003035RWP-RK domain
SuperFamilySSF542771.77E-21737827No hitNo description
Gene3DG3DSA:3.10.20.2402.2E-22740823No hitNo description
PROSITE profilePS5174522.627742825IPR000270PB1 domain
SMARTSM006663.3E-24742825IPR000270PB1 domain
PfamPF005643.2E-15743824IPR000270PB1 domain
CDDcd064072.00E-41743824No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MDDGNGAFIP GSASGDFSGS AMDLDFMDEL LNDGCWLETA DEFNFLQAGT LPSSDLNDPQ  60
QYFPPFDHSS CNSNVNSHQE NSQDRSRSFP VESNELGRRM WIAPAATGPS SSVRDRLIHA  120
IGQVKEECTK NRDVLIQIWV PVKKEGKNVL TTIGQPYLLD RQCQSLASYR NVSKDFQFPA  180
DEDSKELVGL PGRVFLRKLP EWTPDVRFFS GVEYPRKNHA KQFNIRGSFA LPVFEQGSRT  240
CLGVIEVVTT TRDISYRPDL ENVCKALEAV DLRSPQDFCP SSLKQYLSFG QGIVGRAFAT  300
NKQCLSADVA AFSKTDYPLS HHAKMFELHA AIAIPLQSSY AGSADFVFEL FLPKDCRNTE  360
EQQQMWDILP ITVQQACQSW HVIMDKELEE TVNEKMVVAS DERFDRDESQ KSASSLFKDS  420
SEAESSWISH MVEAQQKGNG VSVSRDHAKE EPGEEEFKVT SQWGKTQDDM CHKQAFPAFG  480
QFQQNFGPKG SIEAGTDSSS TGHHSSGSVK FGEKRRSKTE KTISLEVLRQ HFAGSLKDAA  540
KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGAEGA FQMGSFYTTF  600
PELTSPDFSG VGGLPSTKTD ENLRQSNPQP ESGIFSAAPS DIKSPSSSCS HSSGSSICCS  660
IGVKQHTTTN NGLVSGDPLM VEDPGGVLKR THSDMELHAL NRDETKLLVR SQSHKTLGEL  720
PSPKTLPPLP KSSGRIIREG GGFRVKAAFG ADKIRFTLQP NWGFGDLQQE TARRFNIDDI  780
SGIDLKYLDE DQEWVLLTCD ADLEECRDVY KMSESHTIKI SLHQPPRPHL VSSLESRGPH  840
LGSSLGTGVP L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0125s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455019.10.0protein NLP2 isoform X2
SwissprotQ7X9B91e-163NLP2_ARATH; Protein NLP2
TrEMBLA0A3N7EYM40.0A0A3N7EYM4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s21550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.11e-156Nin-like family protein