PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0128s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 199aa    MW: 22258.4 Da    PI: 6.088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0128s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122951123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ Fs+   L  H++ H
  SapurV1A.0128s0220.1.p 29 YECSFCKRGFSNAQALGGHMNIH 51
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-62756No hitNo description
Gene3DG3DSA:3.30.160.601.4E-42855IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00922951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6352956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDADDQPSRE NPDHEQEQEQ GTSQATSSYE CSFCKRGFSN AQALGGHMNI HRKDKAKLKN  60
SSNNETRQSS DTTKINPSFS PAAPILIESM AGRDESSIKW PFIGDKAGSD DHDDTKRDRA  120
QVGEIQKLRF FYQKSPSTED HQNPSSQVHG ISKKSNLSSS SEIDLELRLW PEPQDSSPAK  180
YMVRIFALHC IFLFEHGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0128s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463877.15e-86transcriptional regulator TAC1
TrEMBLA0A2K1Z2991e-100A0A2K1Z299_POPTR; Uncharacterized protein
STRINGPOPTR_0009s04190.12e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-15C2H2 family protein