PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0129s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10797.3 Da    PI: 8.5128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0129s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-281059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            rien + rqvtfskRr g++KK +ELSvLCdae+ +iifss+gklye++s
  SapurV1A.0129s0120.1.p 10 RIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCS 59
                            8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.132161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-30281IPR002100Transcription factor, MADS-box
CDDcd002657.38E-39265No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003199.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MGRGKIAITR IENRTARQVT FSKRRGGLFK KTHELSVLCD AEIGLIIFSS NGKLYEFCSE  60
SSSSVKRVLS DEPEWSDFDR NVAGIHAPCF FHTEW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-21177174MEF2 CHIMERA
6bz1_B8e-21177174MEF2 CHIMERA
6bz1_C8e-21177174MEF2 CHIMERA
6bz1_D8e-21177174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0129s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318890.23e-37MADS-box protein FBP24 isoform X1
RefseqXP_024437594.13e-37MADS-box protein FBP24 isoform X2
SwissprotQ9ATE55e-30FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A3N7FUJ26e-36A0A3N7FUJ2_POPTR; Uncharacterized protein
TrEMBLB9I4N67e-36B9I4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14770.12e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-27MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]