PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0129s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 273aa    MW: 30471.9 Da    PI: 5.59
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0129s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.3e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++lv+ +  +G  +W+++++  g++R++k+c++rw +yl
  SapurV1A.0129s0270.1.p 14 KGPWTAEEDKKLVNFILTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding47.73.7e-1572111647
                             HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.0129s0270.1.p  72 DDEEQLVIDLHACLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                             69***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-22562IPR009057Homeodomain-like
PROSITE profilePS5129414.483961IPR017930Myb domain
SuperFamilySSF466891.09E-2611108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001671.38E-101661No hitNo description
PROSITE profilePS5129425.68262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2363117IPR009057Homeodomain-like
SMARTSM007178.2E-1366114IPR001005SANT/Myb domain
CDDcd001672.23E-1071111No hitNo description
PfamPF002493.2E-1372111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVNFIL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NDDEEQLVID LHACLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKKG  120
IDPVTHEPLD KHGSPPESTA PCHTNYDKPN FNADDQQVLP QNCGHVSSIT TDNSSTTTPT  180
ENSSVDERTG SSEPNSDDDP LMSCIWSEVF LDDSSWNFQA TREDYSEFGV SKSSSEHSNS  240
PWVLDSKDLG DEFFGISCFS DMDLSALDMG GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0129s0270.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707860.0AB970786.1 Populus tremula x Populus tremuloides PtxtMYB075 mRNA for MYB transcriptional factor, complete cds.
GenBankFJ2090880.0FJ209088.1 Populus x canadensis transcription factor MYBL1 (MYBL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321838.31e-166protein ODORANT1
RefseqXP_011029963.11e-166PREDICTED: protein ODORANT1-like
SwissprotQ50EX62e-91ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2K1XM701e-165A0A2K1XM70_POPTR; Uncharacterized protein
TrEMBLB9ICU51e-165B9ICU5_POPTR; MYB family protein
STRINGPOPTR_0015s14600.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.15e-87myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]