PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0130s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 229aa    MW: 25855.5 Da    PI: 8.011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0130s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEde+lv  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0130s0360.1.p 14 KGAWTREEDERLVAHIQAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding54.42.9e-1767110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++T+ Edel+++++ ++G++ W++Ia +++ gRt++++k++w++
  SapurV1A.0130s0360.1.p  67 RGNFTEKEDELIIKLHSLFGNK-WSLIAGRLP-GRTDNEIKNYWNT 110
                             89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.675961IPR017930Myb domain
SuperFamilySSF466892.43E-2913108IPR009057Homeodomain-like
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
CDDcd001674.27E-101661No hitNo description
PROSITE profilePS5129427.51762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2765116IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.3E-1567110IPR001005SANT/Myb domain
CDDcd001674.30E-1269110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTRE EDERLVAHIQ AHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEKEDELIIK LHSLFGNKWS LIAGRLPGRT DNEIKNYWNT RIKRKLLSRG  120
FDPLTHRPIN ESAIDDMTTS LGAVLEEEEI TSGFGCKNLK NPDGEKCQEL NLELRICPPY  180
QHPPHSMDGM GRNIPCFYCI LGLKNSKDCS CGSDSDDFLA MKNGALDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0130s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383085.21e-149myb-related protein 308
SwissprotP813931e-99MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2K2AF671e-148A0A2K2AF67_POPTR; Uncharacterized protein
STRINGPOPTR_0005s11410.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-90myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]