PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 350aa    MW: 38686 Da    PI: 6.1929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09187234455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++iN+++  L+el+P +    +k    a +L + +++++sLq
  SapurV1A.0133s0090.1.p 187 SHSLAERARREKINQRMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 234
                             8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-15181251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-8181238No hitNo description
Gene3DG3DSA:4.10.280.105.0E-14183246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.672183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-8189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDLTTGSGPE LDETGLDSLQ LGEDIRHLIA APSENASSFT ALLELPANQA VELLHSDSGR  60
KQYPNLTFPS NTALLERAAI FSVFHSSNSA DSSSVPSNSS SKNLEKGSAV KCEQLETESY  120
LDSCQPLVSD PTVDNSAPNA RPSSKRKERE KKVKAASKKS KSESSQQEEE KLPYVHVRAR  180
RGQATDSHSL AERARREKIN QRMKLLQELV PGCNKISGTA LVLDEIINHV QSLQRHVEFL  240
SMRLAAINPG MDFNVDSLLA AESGSLIDSN FPNMAMPLMW PEAQVNGNRH QFQQHWQFDS  300
LQQPVWGREE DSHNFITPEN SHLSYDSSAN SASLHSNQLK MEGRMKLHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020295.10.0PREDICTED: transcription factor bHLH48-like isoform X2
RefseqXP_011020297.10.0PREDICTED: transcription factor bHLH48-like isoform X2
SwissprotQ3EAI19e-94BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A2K1ZXD70.0A0A2K1ZXD7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]