PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0370.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 698aa    MW: 76161.2 Da    PI: 6.4637
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07274294526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C++f++ G C++Gd C +aHg
  SapurV1A.0133s0370.1.p 274 PCPDFRK-GACRRGDMCEYAHG 294
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127966.7E-1053126IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-1654136IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-1755135IPR020683Ankyrin repeat-containing domain
CDDcd002043.97E-1456135No hitNo description
PROSITE profilePS5029717.50257133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0055787IPR002110Ankyrin repeat
PRINTSPR014152.7E-55873IPR002110Ankyrin repeat
PROSITE profilePS5008812.18292127IPR002110Ankyrin repeat
SMARTSM002480.01992124IPR002110Ankyrin repeat
PRINTSPR014152.7E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6269295IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5274294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582274296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4274296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4302332IPR000571Zinc finger, CCCH-type
SMARTSM0035633304327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MNHLTVETED TFASLLEFAA NNDVEGFKRS VERDPSCVDQ IGLWYGRQKG SKKMANEHRT  60
PLMVAATYGS IDVIKVILSL SDADVNRSCC VNKGTALHCA ASGGAVNAVD VVKLLLAAGA  120
DANVADANGH RPIDVIVLPP KFQEARLTLE GLLSTDGYVI ENNLRVSMSN SNSPPPSPSL  180
EDMSLLSGSY SPMKSKLNEA PVLFVSEKKE YPVDPSLPDI KNSIYSTDEF RMYSFNVRPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL  300
HPAQYRTRLC KDGTNCARRV CFFAHTVEEL RPLYVSTGSA VPSPRSSTSA ATAMDFAAAM  360
SLLPGSPSSS VMSPQPFSPP MSPSANGLSH SSMAWLQPNV PALHLPGSNL QSSRLRSSFN  420
ARDIQADYNL LPDFDVQQQQ RFSELSSLSQ PSLSNNSLNR SGRLKTLTPS NLDDLFSAES  480
LSPQYADQAL ASAVFSPSHK SGVLNQLQQQ QSLLSPINTN FSPKNVDHPL LQASFASGRM  540
SPRNVEPLSP MSSRVSMLAQ REKQQQQLHS ISSQELGSNT AAIVGSPVNS WSKWGSSNGK  600
PDWTVSADEF GKVRRSNSFE LGNGDEPDLS WVQSLVKESP TEMKEKSTVH VSESVTASAS  660
SSECSNINSQ TEPADLDHAV GSWIEQLHID HLVVQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308039.30.0zinc finger CCCH domain-containing protein 30
RefseqXP_024459790.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K1ZX870.0A0A2K1ZX87_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]