PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0370.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 531aa    MW: 58296.9 Da    PI: 6.7826
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0370.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07107127526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C++f++ G C++Gd C +aHg
  SapurV1A.0133s0370.4.p 107 PCPDFRK-GACRRGDMCEYAHG 127
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-6102128IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5107127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4135165IPR000571Zinc finger, CCCH-type
SMARTSM0035633137160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MSNSNSPPPS PSLEDMSLLS GSYSPMKSKL NEAPVLFVSE KKEYPVDPSL PDIKNSIYST  60
DEFRMYSFNV RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD  120
MCEYAHGVFE CWLHPAQYRT RLCKDGTNCA RRVCFFAHTV EELRPLYVST GSAVPSPRSS  180
TSAATAMDFA AAMSLLPGSP SSSVMSPQPF SPPMSPSANG LSHSSMAWLQ PNVPALHLPG  240
SNLQSSRLRS SFNARDIQAD YNLLPDFDVQ QQQRFSELSS LSQPSLSNNS LNRSGRLKTL  300
TPSNLDDLFS AESLSPQYAD QALASAVFSP SHKSGVLNQL QQQQSLLSPI NTNFSPKNVD  360
HPLLQASFAS GRMSPRNVEP LSPMSSRVSM LAQREKQQQQ LHSISSQELG SNTAAIVGSP  420
VNSWSKWGSS NGKPDWTVSA DEFGKVRRSN SFELGNGDEP DLSWVQSLVK ESPTEMKEKS  480
TVHVSESVTA SASSSECSNI NSQTEPADLD HAVGSWIEQL HIDHLVVQQN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0370.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308039.30.0zinc finger CCCH domain-containing protein 30
RefseqXP_024459790.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K1ZX870.0A0A2K1ZX87_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05250.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]