PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0380.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 729aa    MW: 79228.3 Da    PI: 6.7415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07298318526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C++f++ G C++Gd C +aHg
  SapurV1A.0133s0380.1.p 298 PCPDFRK-GACRRGDMCEYAHG 318
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.35E-1645180IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-983156IPR020683Ankyrin repeat-containing domain
CDDcd002048.42E-1486179No hitNo description
Gene3DG3DSA:1.25.40.201.8E-1586176IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1887117IPR002110Ankyrin repeat
PROSITE profilePS5029717.36987180IPR020683Ankyrin repeat-containing domain
SMARTSM002482.7E-4122154IPR002110Ankyrin repeat
PROSITE profilePS5008811.968122157IPR002110Ankyrin repeat
SMARTSM003564.0E-6293319IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5298318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582298320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4298320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4326356IPR000571Zinc finger, CCCH-type
SMARTSM0035633328351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MSCQLERLKL AATPALPTIS SDKNQPSNIV MNYLAVETED TFASLLELAA NNDVEGFKQS  60
IERDPSCVDE IGLWYCRKKG SKQMVNEHRT PLMVSATYGS IDVMKEILSL SYVDVNRSCG  120
ADKSTALHCA ASGGALNAAD VVKLLLAAGA DCNVVDANGH RPIDVIAVLP KLQDVRMILE  180
ELLAADGSHA EHILRVSIAT MNSNSPPLSP SMENSDSPTK AKLNDAPLAS EKREYPVDPS  240
LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP  300
DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTNC ARRVCFFAHT VEELRPLYVS  360
TGSAVPSPRS STSAATAMDF AAAMNLLSGS PSSIMSPSPF TPPMSPSANG IPHSSVAWPQ  420
PNVPALHLPG SNLQSSRLRS SLNARDISAD YNLLPDFDVQ QQQLLSELSS LAQPSLNNNS  480
MNHSGRLKTL TPSNLDDLFS AESSSPRYAG SSPRYADQAL ASAVFSPSHK SAVLNQFQQQ  540
QSMLSPINTN FSPKNVDHPL LQASFASGRM SPRNVEPISP MSSRVTMMAQ REKQLQKMRS  600
LSSRELGSNA AAIVGSPPVN TLSKWGSSVG KPDWTLSTCE QGKLCRSNSF ELGNGDGPDL  660
SWVQSLVKES PTEMKDKLKI PVSGGIGASA SPSESTNMNS QIESIDLDNM VGSWVEHLQI  720
DQLVAQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308038.20.0zinc finger CCCH domain-containing protein 30
RefseqXP_024459937.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024459938.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9H9X30.0B9H9X3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]