PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0240.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 207aa    MW: 23758.2 Da    PI: 5.4905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0240.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-155599655
                            HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                               Er+RR+++N++++ Lre +Pk +      Kl+Ka+i + A++YIk+Lq
  SapurV1A.0140s0240.2.p 55 TVSERNRRRKLNDKLFALREAVPKiS------KLDKASIIKDAIDYIKDLQ 99
                            568*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1841113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.9674998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-1352103No hitNo description
Gene3DG3DSA:4.10.280.102.5E-1855115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-135599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-1655104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MENFEDIFDY QNYWEMANMS WNDELNSWDM DPASTQIYDS SSPDGAASAI ASRNTVSERN  60
RRRKLNDKLF ALREAVPKIS KLDKASIIKD AIDYIKDLQQ QESRLQAEIR ELESERLEKD  120
LPVLLTSKKI PDPRRDPIEV HQLRVTSMGE KTLFVSLTCS KAREATARIC EVFESLKVKI  180
ITASVTTVSG MVKTTILIEI WKRWII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15261RNTVSERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0240.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445132e-92EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372183.11e-115transcription factor bHLH35 isoform X2
SwissprotQ2HIV93e-62BH035_ARATH; Transcription factor bHLH35
TrEMBLU5FGC41e-113U5FGC4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13830.11e-105(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-65bHLH family protein