PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 248aa    MW: 28483.5 Da    PI: 6.0661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28e-1057100755
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               Er RR+++ +++  Lr  + k +      Kl+Ka++ + A++YI++Lq
  SapurV1A.0140s0250.1.p  57 VSERSRRKKLSDKLLALRAAVLKiS------KLDKASVIKDAIKYIQDLQ 100
                             57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1441113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.3635099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-853104No hitNo description
SMARTSM003534.9E-1056105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1256117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-757100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDVIDNHLDY QNYWETALFW NEDLDYSWET NQQFSVGNTD SSSPDENTQK IASKNIVSER  60
SRRKKLSDKL LALRAAVLKI SKLDKASVIK DAIKYIQDLQ EQERILQADI RELESRRLET  120
NHTRDIEDEL PVLLRSKRTK YDQVYDHWMA RSACPIQVHE LSVTSMGERT LFVSLTCSKT  180
ADAMIRICEV FESLKLKIIT ANITALSGMV KKTVLIEVDE EEKEHLKAKI ERGVSALRSA  240
YNPMMGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ3631860.0KJ363186.1 Populus euphratica bHLH35 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001291248.11e-157transcription factor bHLH35-like
SwissprotQ2HIV91e-69BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A075TDQ21e-155A0A075TDQ2_POPEU; BHLH35 protein
STRINGPOPTR_0018s13850.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-72bHLH family protein