PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 240aa    MW: 27412.5 Da    PI: 8.7419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.7e-075684737
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS- CS
                     HLH  7 erErrRRdriNsafeeLrellPk.askapskK 37
                            + Er+RR++ N++++ Lre +P  +   + ++
  SapurV1A.0140s0260.1.p 56 ASERNRRKKFNDKLFALREAVPIiS---KETR 84
                            78********************866...4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.41E-65285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-45389No hitNo description
PfamPF000101.9E-45584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-45684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
METFENNAGY QNYWEMTDMF WNDELNSLAM GQASSQNCYP SLPDGAASPK AYKSRASERN  60
RRKKFNDKLF ALREAVPIIS KETRLQAEIM GLDSERLEKE RGYEFERERP ALLRSKKTMY  120
DQISDHRAPI SDPIEVHQLR VSSVGEKTLL VSLICSKAKE AMIRIFEVFE SLQLKIITAS  180
VTTFSGMVKK TVLIEIKIVS NKKWLLKLYA DGEDKDHLKL KIERAISALS APYNFEACN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1445131e-106EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324689.21e-104transcription factor bHLH35 isoform X1
TrEMBLA0A3N7G7Q01e-103A0A3N7G7Q0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13830.11e-105(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-37bHLH family protein