PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0142s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 456aa    MW: 49149.5 Da    PI: 8.0587
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0142s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.4e-125075126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                            ++ + C +++rtG C yG++C+F+H+
  SapurV1A.0142s0270.1.p 50 PGVPDCGYYLRTGLCGYGSNCRFNHP 75
                            5789*********************9 PP
2zf-CCCH36.48.7e-12113137327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++ C ++++tGtCkyG++Ck++H++
  SapurV1A.0142s0270.1.p 113 QPDCGYYLKTGTCKYGSTCKYHHPR 137
                             789********************96 PP
3zf-CCCH18.82.9e-061581711427
                             --TTTTT-SS-SSS CS
                 zf-CCCH  14 tCkyGdrCkFaHgp 27 
                              Ck+G  CkF+H++
  SapurV1A.0142s0270.1.p 158 SCKFGVACKFHHPQ 171
                             6***********97 PP
4zf-CCCH34.73e-11296321126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +++++Cr+f+ tGtCkyG+ Ck++H+
  SapurV1A.0142s0270.1.p 296 PGQPECRHFMSTGTCKYGSDCKYHHP 321
                             5789*********************9 PP
5zf-CCCH31.33.6e-10343367226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++ C++++ +G+Ck+G++C++ H+
  SapurV1A.0142s0270.1.p 343 GQAVCPDYSMYGICKFGPTCRYDHP 367
                             7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9344977IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-64976IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-45574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643110138IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5110137IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9113137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4116137IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.244158172IPR000571Zinc finger, CCCH-type
PfamPF146083159170No hitNo description
PROSITE profilePS5010316.474295323IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9297321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7299324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5301321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859341369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6341366IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6341368IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7343367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MPDHNNRQVK SNAVSNQSAE NIEEAIRRLK IHDHQEQGGM AQSSPYPDRP GVPDCGYYLR  60
TGLCGYGSNC RFNHPVYAAL VICAVTLELV VLILLFSVKG AQLREELPER VGQPDCGYYL  120
KTGTCKYGST CKYHHPRDRN GAGPVSFNML GLPMRQVSCK FGVACKFHHP QPASFGTGLS  180
LAGAAAFGST GSPIVPSPGL PYVGGLPTWS LPRAPPYMPG TNLQGPQAYM PVVVSPSPGI  240
VPVPGWNTYV GNLNPVSSSS MMRSNRAYDS RNQGDSGSSG QVHLLSTASP ILPERPGQPE  300
CRHFMSTGTC KYGSDCKYHH PYERIAQLVA ITTDPFGLPS RPGQAVCPDY SMYGICKFGP  360
TCRYDHPSPA YPYNYSLSLP SLSIMDSALI TYPRMLQAAP VSLSKLPDLI HNPAGVNYNR  420
HQNPDTSTKI SDDPTEQAGS PPPHSSQASS EPSHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0142s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320490.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9IAL10.0B9IAL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.25e-91C3H family protein