PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0145s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 225aa    MW: 25340.6 Da    PI: 5.6506
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0145s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.22.5e-30152206155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kprlrWt++LH++Fv+av++LGG++++tP+++l+lm+v+gLt+ +vkSHLQkYR 
  SapurV1A.0145s0130.1.p 152 KPRLRWTEDLHSCFVNAVKELGGPQQTTPRSVLRLMNVEGLTIFQVKSHLQKYRQ 206
                             79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.982149209IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-28150206IPR009057Homeodomain-like
SuperFamilySSF466893.94E-16152206IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24152206IPR006447Myb domain, plants
PfamPF002494.8E-9154205IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSDKKGGHDD DREDTFFGGE RVGIPMESHH FFDGFHKEND GRSGFLDFGY GNPKNQYFEL  60
KLPHADHDDT QLGHLSPHGD CDENDETPTH HVPQNGTYHP AAVSSNEEVG GVVVEKEEEE  120
NNKEGPEQQP PSPPPPQQAH SHLRISYTSD LKPRLRWTED LHSCFVNAVK ELGGPQQTTP  180
RSVLRLMNVE GLTIFQVKSH LQKYRQGRYS VRGYSEPLRN GESF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-20152209158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-20152209158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-20152209158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-20152209158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0145s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008189.17e-97PREDICTED: uncharacterized protein LOC105113636 isoform X1
TrEMBLA0A3N7FZ888e-91A0A3N7FZ88_POPTR; Uncharacterized protein
STRINGPOPTR_0014s17030.16e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1880056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.17e-25G2-like family protein