PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0146s0200.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 188aa MW: 20444.9 Da PI: 9.0567

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0146s0200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.1	2.5e-21	4	65	67	128
NAM 67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++a+g r+nr+t+sgyWkatg+ + v+s++++++gl kt+vfy g+ap+g+kt+W m+eyr+ SapurV1A.0146s0200.1.p 4 REARGGRPNRSTASGYWKATGSPRYVYSSDNQVIGLMKTMVFYMGKAPSGRKTKWKMNEYRA 65 567899******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	26.798	1	91	IPR003441	NAC domain
SuperFamily	SSF101941	9.94E-24	4	90	IPR003441	NAC domain
Pfam	PF02365	5.8E-9	9	64	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MQAREARGGR PNRSTASGYW KATGSPRYVY SSDNQVIGLM KTMVFYMGKA PSGRKTKWKM 60 NEYRAIGAHG LSRNATPKLR HEFSLCRVYV VSGSFRAFDR RPLGAVAGET QHPLGVPHAG 120 DAATTSAQNL MIVEMTSSPE TSYSGEDHVD NPGTAAGASW GLLDGLEPPE WEWPEQLHCP 180 GTDRFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-18	8	89	86	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-18	8	89	86	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-18	8	89	86	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-18	8	89	86	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-18	8	89	89	166	NAC domain-containing protein 19
3swm_B	3e-18	8	89	89	166	NAC domain-containing protein 19
3swm_C	3e-18	8	89	89	166	NAC domain-containing protein 19
3swm_D	3e-18	8	89	89	166	NAC domain-containing protein 19
3swp_A	3e-18	8	89	89	166	NAC domain-containing protein 19
3swp_B	3e-18	8	89	89	166	NAC domain-containing protein 19
3swp_C	3e-18	8	89	89	166	NAC domain-containing protein 19
3swp_D	3e-18	8	89	89	166	NAC domain-containing protein 19
4dul_A	3e-18	8	89	86	163	NAC domain-containing protein 19
4dul_B	3e-18	8	89	86	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0146s0200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298277.2	6e-90	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-51	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2K2C1M7	1e-88	A0A2K2C1M7_POPTR; Uncharacterized protein
STRING	POPTR_0001s22630.1	2e-89	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	3e-53	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	SapurV1A.0146s0200.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]