PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0149s0160.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 256aa    MW: 28250.8 Da    PI: 8.8885
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0149s0160.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.75.6e-3358114257
             ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                             ++v YkeClkNhAas Gg a+DGCgEfmp+++++  ++a+lkCaACgCHRnFHRre+
  SapurV1A.0149s0160.2.p  58 TEVSYKECLKNHAASFGGLALDGCGEFMPKPTTTpQDPASLKCAACGCHRNFHRREP 114
                             5799****************************9999*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2860113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2160114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3062113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.20662113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.02E-15185253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-26185253IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-25191248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTKAMDLTSI PHHISKSPDS DTDTETPLQT HLTKALSLNG SYKTHQNHCF APPPEQHTEV  60
SYKECLKNHA ASFGGLALDG CGEFMPKPTT TPQDPASLKC AACGCHRNFH RREPFGPATL  120
MQPALNWTTS PSPGSTSSGP SPSPTSPASP TPQSFYPSAP HMLLALSTGH PDDTQLQIQG  180
HSLVMTSSHG KKRARTKFSR EQKERMYLFA EKLGWRMPRG NNDRDVEEFC SEIGVNRNVF  240
KVWMHNNRSR KEKAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-171922491874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0149s0160.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485561e-137EF148556.1 Populus trichocarpa x Populus deltoides clone WS0134_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017078.11e-147PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ12e-59ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A1L6K4L71e-129A0A1L6K4L7_POPTO; Uncharacterized protein
TrEMBLB9HI661e-129B9HI66_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08560.11e-130(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-54zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]